Centers

Center for Marine Functional Genomic Studies

Center for Membrane Toxicity Studies

Bioinformatics

Comparative Toxicogenomics Database

Shark, Skate, and Lobster ESTs

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Investigators

David Barnes
James Coffman
George Kidder
Carolyn Mattingly
Antonio Planchart
Denry Sato
David Towle

Seasonal Investigators

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Seasonal Research Opportunities

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CTDThe Comparative Toxicogenomics Database

CTD Home Page The Comparative Toxicogenomics DatabaseTM (CTD: ctd.mdibl.org) is a public, web-accessible database designed and curated to promote understanding about the effects of environmental chemicals on human health.

Most human diseases involve interactions between genetic and environmental factors. 85,000 chemicals are listed in the US Environmental Protection Agency Toxic Substances Control Act Chemical Substances Inventory, but the molecular mechanisms underlying the actions of many of these chemicals are still poorly understood.

CTD identifies gene-chemical interactions in diverse species and facilitates cross-species comparative studies of these genes. These comparisons help identify functionally conserved sequences, provide insight into their function and role in modulating chemical actions, and improve understanding about the genetic basis of variable susceptibility to environmental chemicals.

multiple sequence alignment CTD provides pre-generated multiple sequence alignments (left) and phylogenetic trees (not shown) using cDNA and amino acid sequences from curated sets of toxicologically important genes and proteins ("Gene Sets"). These visualizations help researchers evaluate relationships and determine similarity between evolutionarily related sequences.

More Information

For more information, please refer to our publications or contact us directly.

Personnel

James L. Boyer, MD
Principal Investigator
John N. Forrest, Jr, MD
Participating Investigator
Carolyn J. Mattingly, PhD
Co-Investigator; Director of Bioinformatics
Thomas C. Wiegers
Scientific Software Engineer
Michael C. Rosenstein, JD
Scientific Software Engineer

Support

CTD is supported by the NIEHS (ES11267) and the Mount Desert Island Biological Laboratory.


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