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Quantitative Fluorescence Microscopy

A national techniques course in fluorescence microscopy and imaging

Date:  May 18-25, 2012
Location:   Mount Desert Island Biological Laboratory

Overview

fluorescence

This one week, intensive microscopy course will cover all aspects of the technology from the principals of fluorescence imaging to multidimensional imaging in living cells. Lectures dealing with the theory, mechanics, and application of fluorescent imaging methods will be intermingled with extended laboratory practicals in which students will be encouraged to use their own specimens, to optimize the utility of the course. Our goal will be to provide students with the knowledge and expertise to implement cutting edge microscopic methods within their own laboratories.

Registration

Apply Online

Contact

Simon C. Watkins, Ph.D., Course Director
Professor, Cell Biology & Physiology
University of Pittsburgh School of Medicine
412-648-3051
swatkins@pitt.edu

 

Michael McKernan
Director, Education and Conferences
207-288-3605
mmckernan@mdibl.org

Tuition

$3,050 (room and board included)

Rationale

The power and capability of the light microscope has increased dramatically over the last few years. In fact light microscopy is now becoming of central utility in all fields of biological research including cell biology, physiology and molecular biology. This change has been driven by the need to study increasingly sophisticated problems at high spatial and temporal resolution. The advances, principally in the field of fluorescence microscopy have been dependant on the development of entirely new microscopic methodologies coupled to the use of fluorescent proteins, new fluorescent dye technologies, highly sensitive detectors and inexpensive powerful computers.

Our goal will be to provide students with the knowledge and expertise to implement cutting edge microscopic methods within their own laboratories. In contrast with other currently available courses it will focus exclusively on the theory, potential application and implementation of fluorescent imaging techniques, and perhaps more importantly this will be couched in the real world application of biological experimentation.

This one week, intensive course will cover all aspects of the technology from the principals of fluorescence imaging to multidimensional imaging in living cells. Lectures dealing with the theory, mechanics, and application of fluorescent imaging methods will be intermingled with extended laboratory practicals in which students will be encouraged to use their own specimens, to optimize the utility of the course.

Teaching Faculty

Simon C. Watkins, Ph.D.
Professor, Cell Biology & Physiology
University of Pittsburgh School of Medicine
Pittsburgh, PA 15261 USA
Phone:(412)648-3051
Fax: 648-8330
swatkins@pitt.edu

David W. Piston, Ph.D.
Professor of Molecular Physiology and Biophysics
Associate Professor of Physics
Vanderbilt Medical Center
1211 22nd Ave S
Nashville, TN 37232

Claudette M. St. Croix, Ph.D.
Assistant Professor
Department of Environmental and Occupational Health University of Pittsburgh Graduate School of Public Health
s220 BST 3500 Terrace Street
Pittsburgh, PA 15219

Anne Kenworthy, Ph.D.
Assistant Professor
Vanderbilt University
Nashville, TN

Industrial Faculty

Friday, May 18, 2012
1:00-6:00 pm Arrival
Check in to on or off-campus housing
6:00-7:00 pm Dinner
MDIBL Dining Hall
7:00 pm Welcome reception and social
Lobby, MDIBL Conference Center
Saturday, May 19, 2012
9:00-9:30 am Introduction
Welcome, Introductions, Define Course Goals
Watkins/Piston
9:30-10:30 am The Microscope 1
From Van Leeuwenhoek to Digital Imaging
Watkins
10:30-11:00 am Break
11:00-12:00 pm The Microscope 2
Transmitted Light Contrast in Microscopy
Piston
12:00-1:00 pm Lunch
1:00-2:30 pm LAB
TRANSMITTED LIGHT MICROSCOPY
2:30-3:00 pm Break
3:00-3:30 pm The Microscope 3
Principal of Fluorescence
Piston
3:30-4:30 pm The Microscope 4
Fluorescence Microscope Design
Piston
4:30-5:00 pm Break
5:00-5:30 pm The Microscope 5
Optical Filters for Fluorescence Microscopy
Stanley
5:30-6:00 pm Digital Imaging 1
Digital Imaging and Detector Systems
Watkins
6:00-7:00 pm Dinner
7:00-8:00 pm LAB
SIGNAL-TO-NOISE IN DIGITAL IMAGING
8:00-11:00 pm LAB
STANDARD FLUORESCENCE MICROSCOPY
Sunday, May 20, 2012
9:00-9:30 am Digital Imaging 2
Resolution in Digital Imaging
Watkins
9:30-10:00 am Confocal 1
Introduction to Confocal Microscopes
St. Croix
10:00-10:30 am Confocal 2
Confocal Detectors and "Pseudo-confocals"
Piston
10:30-11:00 pm Break
11:00-12:00 am Live Cell Imaging 1
TIRF, Structured Illumination
Kenworthy
12:00-1:00 pm Lunch
1:00-4:30 pm LAB
CONFOCAL MICROSCOPY
4:30-5:30 pm Tips and Tricks
Practical Digital Imaging
Watkins
6:00-7:00 pm Dinner
8:00-11:00 pm LAB
IMAGE PROCESSING & FEATURE EXTRACTION
Monday, May 21, 2012
9:00-9:30 am Image Processing 1
Digital Filters
Watkins
9:30-10:30 am Image Processing 2
Deconvolution
Piston
10:30-11:00 am Break
11:00-12:00 pm Confocal 3
3D Methods, Microfluorimetry Applications
St. Croix
12:00-1:00 pm Lunch
1:00pm-4:30 pm LAB
MULTICOLOR 3-D IMAGING
4:30-5:30 pm Tips and Tricks
Cell Labeling, Antibodies, GFP, Practical Aspects
Watkins
6:00-7:00 pm Dinner
Evening Off
Tuesday, May 22, 2012
9:00-10:30 am Live Cell Imaging 2
Advanced Imaging Techniques, Quantitation
Kenworthy
10:30-11:00 am Break
11:00 am - 12:00 pm Multiphoton 1
Theory, Instrumentation, Applications
Piston
12:00 noon Course Photo
12:00-1:00 pm Lunch
1:00-4:30 pm LAB
DECONVOLUTION, APOTOME, FRAP
4:30-5:30 pm Tips and Tricks
Live Cell Imaging Microscope Design
Watkins
6:00-7:00 pm Dinner
7:00-8:00 pm LAB
MULTIPHOTON, TIRF LAB
Wednesday, May 23, 2012
9:00-10:30 am Live Cell Imaging 3
Multicolor and Ratio Imaging
St. Croix
10:30-11:00 pm Break
11:00-12:00 pm Live Cell Imaging 4
FRET and Live Cell Imaging
Kenworthy
12:00-1:00 pm Lunch
1:00-4:00 pm LAB
LIVE CELL FRET IMAGING
4:00-4:30 pm LAB
LIVE CELL CHAMBERS, SETUP COLLABORATIVE GROUPS BASED ON STUDENT INTERESTS
4:30-5:30 pm Tips and Tricks
How to Manage Data, Make Movies, Etc
Staff
6:00-7:00 pm Dinner
7:00-11:00 pm LAB
RATIO IMAGING METHODS TRACKING, QUANTITATION, STUDENT EXPERIMENTS
Thursday, May 24, 2012
9:00-10:00 am Live Cell Imaging 5
Comparison of Optical Sectioning Approaches
Piston
10:00-12:00 am LAB
COLLECT DATA, PREPARE PRESENTATIONS
12:00-2:00 pm Lunch
2:00-4:00 pm Results!
Student Presentations
4:00-4:30 pm Mechanics
How Do I Get Money to Pay for All This Stuff?
Watkins
4:30-5:00 pm Summing up
Q&A, Student Feedback
Faculty
5:30 pm Lobster Bake
Caravan to Thompson Island Picnic Area
Friday, May 25, 2012
9:00 am Departure
Check out of on-campus housing at 9 am

Housing: On-campus housing is available in single and double-accommodation dormitory rooms and cottages. The course fee includes the cost of on-campus housing.

Travel, Shuttles, and Public Transportation: Detailed travel information, including airport and ground transportation suggestions, is available on the MDIBL Travel page.

Most course participants will be housed on-campus and daily transportation will not be necessary. Public transportation around Mount Desert Island is available on the Island Explorer Shuttle Bus system. Driving directions from Boston and Bangor to MDIBL are also available .

The Bar Harbor Chamber of Commerce has information regarding local attractions, including Acadia National Park.

A small number of full and partial tuition fellowships may be available, and have previously been awarded to graduate students.  Fellowships cover the cost of course tuition and exclude travel.

Please indicate on the application form if you would like to request fellowship support.

 
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